Plant epigenetics and epigenomics: methods and protocols / ed. by Ch.Spillane, P.C.McKeown. - New York: Humana Press/Springer Science+Business Media, 2014. - x, 245 p.: ill. - (Methods in molecular biology; 1112) (Springer protocols). - Bibliogr. at the end of the chapters. - Ind.: p.243-245. - ISBN 978-1-62703-772-3; ISSN 1064-3745 Шифр: (Pr 852/1112) 02  Место хранения:   02 | Отделение ГПНТБ СО РАН | Новосибирск

Оглавление / Contents

Preface ......................................................... v Contributors ................................................... ix 1 Landscaping Plant Epigenetics ................................ 1 Peter C. McKeown and Charles Spillane 2 The Gene Balance Hypothesis: Dosage Effects in Plants ....... 25 James A. Bircbler and Reiner A. Veitia 3 High-Throughput RNA-Seq for Allelic or Locus-Specific Expression Analysis in Arabidopsis-Related Species, Hybrids, and Allotetraploids ................................ 33 Danny W-K. Ng, Xiaoli Shi, Gyoungju Nah, and Z. Jeffrey Chen 4 Inference of Allele-Specific Expression from RNA-seq Data ... 49 Paul K. Korir and Cathal Seoighe 5 Screening for Imprinted Genes Using High-Resolution Melting Analysis of PCR Amplicons ........................... 71 Robert Day and Richard Macknight 6 Analysis of Genomic Imprinting by Quantitative Allele- Specific Expression by Pyrosequencing® ...................... 85 Peter C. McKeown, Antoine Fort, and Charles Spillane 7 Endosperm-Specific Chromatin Profiling by Fluorescence- Activated Nuclei Sorting and Chip-on-Chip .................. 105 Isabelle Weinhofer and Claudia Köhler 8 Imaging Sexual Reproduction in Arabidopsis Using Fluorescent Markers ........................................ 117 Mathieu Ingouff 9 Genome-Wide Analysis of DNA Methylation in Arabidopsis Using MeDIP-Chip ........................................... 125 Sandra Cortijo, Rene Wardenaar, Maria Colome-Tatche, Frank Johannes, and Vincent Colot 10 Methylation-Sensitive Amplified Polymorphism (MSAP) Marker to Investigate Drought-Stress Response in Montepulciano and Sangiovese Grape Cultivars ............... 151 Emidio Albertini and Gianpiero Marconi 11 Detecting Histone Modifications in Plants .................. 165 Jie Song, Bas Rutjens, and Caroline Dean 12 Quantitatively Profiling Genome-Wide Patterns of Histone Modifications in Arabidopsis thaliana Using ChlP-seq ....... 177 Chongyuan Luo and Eric Lam 13 Analysis of Retrotransposon Activity in Plants ............. 195 Christopher DeFraia and R. Keith Slotkin 14 Detecting Epigenetic Effects of Transposable Elements in Plants ..................................................... 211 Christian Parisod, Armel Salmon, Malika Ainouche, and Marie-Angele Grandbastien 15 Detection and Investigation of Transitive Gene Silencing in Plants .................................................. 219 Leen Vermeersch, Nancy De Winne, and Ann Depicker Index ......................................................... 243